PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491031.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 695aa    MW: 76668.3 Da    PI: 6.8197
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491031.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.3e-07269289526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  XP_004491031.1 269 PCPEFRK-GSCQKGDSCEYAHG 289
                     8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1524149IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-1627171IPR020683Ankyrin repeat-containing domain
CDDcd002043.30E-1271170No hitNo description
PROSITE profilePS5029715.372152IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-772138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02172102IPR002110Ankyrin repeat
PROSITE profilePS5008810.713107142IPR002110Ankyrin repeat
SMARTSM002480.0067107139IPR002110Ankyrin repeat
SMARTSM003564.0E-5264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544264291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5269291IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5269289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4296328IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.132299323IPR000571Zinc finger, CCCH-type
SMARTSM0035620299322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MCSGSKSKLS SSDYGMENKL QKGIHNSSIL LELSASDDFE AFKREVDEKG LDVNEEGFWY  60
GRRIGSKKMG SEKRTPLMIA SLFGSTEVLK YIILTGKVDV NRVCGSDMAT ALHCAVAGGS  120
EFSLEIVKLL LDAGADADCL DASGNKPVDL IVPAFNYLSK SRRKVLELFL RGGVCDELVL  180
GEMDDPFSLN EGLEKKEKEG GDKKEYPIDI SLPDINNGVY GSDEFRMYSF KVKPCSRAYS  240
HDWTECPFVH PGENARRRDP KKYPYSCVPC PEFRKGSCQK GDSCEYAHGV FESWLHPAQY  300
RTRLCKDETG CNRKVCFFAH KPEELRPVYA STGSAMPSPK SYSASAIDMT SMSPLALSSS  360
SLPMSTVSTP PMSPLAASSS PKSGNLWQNK LNFTPPSLQL SGSRLKSALS ARDMDLEMEL  420
LGLDSPRRQQ QQQQQQQQQL IEEIARISSP SFRSKEFNRI ADLNPTNLDD LLASTDPSLL  480
SQLHGLSMQP STPTQMQSSP SAMQMRQNMN HLRASYPSNM PSSPVRKPSA YGFDSSAAVA  540
AAVMNSRSAA FAKQRSQSFI DRGAATNHHI GMSSPSNPSC RVSSGFSDWN SPTGKLDWGV  600
NGDELSKLRK SASFGFRNNG VAATASPTAH SGHAEPDVSW VNSLVKDVPS ENSEMYGAER  660
MRQQQQQQQQ YDLSREMLPP WMVEQMYIEQ EQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491031.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLG7K2520.0G7K252_MEDTR; ARM repeat CCCH-type zinc finger protein
STRINGGLYMA14G01990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-174C3H family protein